J Med Assoc Thai 2005; 88 (11):206

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Quantification of HIV-1 RNA Load by One-Tube-One-Step RT PCR and Real Time PCR Assay with TaqMan Probe
Watanaveeradej V Mail, Sirirattanaphoomee S , Chantratita W , Nitayaphan S , Viputtikul K , Kerdpanich A , Samakoses R , Simasathien S

Objectives: To develop a less expensive assay to calculate HIV-1 viral load for use in resource-limited countries.
Material and Method: An In-house One-tube-one-step Viral Load Assay (IOVA) was developed by using real-time PCR-based with TaqMan probe. Primers and probe were designed from the conserved region of sequences from all HIV subtypes. A standard curve was generated from reference virus in various dilutions. IOVA was applied on 105 HIV-positive and 25 HIV-negative samples and compared with the results from ROCHE AMPLICLOR.
Results: IOVA measured HIV RNA in the samples ranging from 125 to 2 x 106 copies/mL. The coefficient of variation of intra- and inter-assay ranged from 0.68% to 7.89%. The sensitivity, specificity, positive and negative predictive values were 92%, 100%, 100% and 79.5% respectively. The parallel quantitative analysis showed high correlation (r=0.95) between IOVA and AMPLICOR.
Conclusion: A new HIV-1 viral load assay was developed and validated. It was reliable and less expensive.

Keywords: HIV, Viral load, Real time PCR, TaqMan


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